Using holographic duality, we reveal a transition in vortex dipole dynamics below a critical dipole size in strongly interacting superfluids, characterized by a significant suppression of mutual friction. In the bulk, this transition is triggered by a topological reconnection of vortex tubes, which disconnects the boundary vortices from the black hole horizon and forms a . Consequently, the post-transition evolution is governed by the contraction of the bulk rather than the mutual friction associated with the horizon, revealing a scale-dependent dissipation mechanism. We further show that this reconnection persists over a broad temperature range, even when the transition becomes unobservable at high temperatures. Our results provide a dissipation-based interpretation for the anomalous critical dipole scale observed in strongly interacting cold-atom experiments, and suggest the existence of distinct dissipative regimes in strongly interacting superfluids.

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