Large language models (LLMs) are increasingly being integrated into first-principles computational workflows, yet their ability to configure scientific calculations remains poorly understood. Here, we introduce INCARBench, a benchmark for evaluating LLMs on input configuration for the Vienna Ab initio Simulation Package (VASP) through both configuration generation and repair tasks. Evaluating 19 model configurations reveals substantial capability differences among current frontier models. While several models achieve high semantic and policy accuracy, task-critical correctness remains substantially lower, demonstrating that parameter-level correctness does not necessarily imply scientifically valid configurations. Failure analysis shows that errors concentrate in physically coupled settings involving DFT+, magnetism, and correlated materials, where multiple constraints must be satisfied simultaneously. Repair evaluation further reveals that correcting incorrect settings and preserving already-valid configurations are distinct capabilities, with configuration preservation remaining a major challenge. These findings establish scientific configuration as a measurable capability of large language models and provide a foundation for developing more reliable AI systems for computational materials science.

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