Quantum spin liquids subject to a periodic drive can display fascinating non-equilibrium heating behavior because of their emergent fractionalized quasi-particles. Here, we investigate a driven Kitaev honeycomb model and examine the dynamics of emergent Majorana matter and flux excitations. We uncover a distinct two-step heating profile dubbed fractionalized prethermalization and a quasi-stationary state with vastly different temperatures for the matter and the flux sectors. We argue that this peculiar prethermalization behavior is a consequence of fractionalization. Furthermore, we discuss an experimentally feasible protocol for preparing a zero-flux initial state of the Kiteav honeycomb model with a low energy density, which can be used to observe fractionalized prethermalization in quantum information processing platforms.

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