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Let be the negative half of a quantum Borcherds-Bozec algebra and be the irreducible highest weight module with . In this paper, we investigate the structures, properties and their close connections between crystal bases and canonical bases of and . We first re-construct crystal basis theory with modified Kashiwara operators. While going through Kashiwara’s grand-loop argument, we prove several important lemmas, which play crucial roles in the later developments of the paper. Next, based on the theory of canonical bases on quantum Bocherds-Bozec algebras, we introduce the notion of primitive canonical bases and prove that primitive canonical bases coincide with lower global bases.

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