This work establishes a framework for solving inverse boundary problems with the geodesic based quadratic Wasserstein distance (). A general form of the Fréchet gradient is systematically derived by optimal transportation (OT) theory. In addition, a fast algorithm based on the new formulation of OT on is developed to solve the corresponding optimal transport problem. The computational complexity of the algorithm is reduced to from of the traditional method. Combining with the adjoint-state method, this framework provides a new computational approach for solving the challenging electrical impedance tomography (EIT) problem. Numerical examples are presented to illustrate the effectiveness of our method.

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