The recent observations of the anomalous X-ray pulsars 4U 0142+61 and 1RXS J170849.0-400910 by the Imaging X-ray Polarimetry Explorer (IXPE) opened up a new avenue to study magnetars, neutron stars endowed with superstrong magnetic fields (~G). The detected polarized X-rays from 4U 0142+61 exhibit a 90 linear polarization swing from low photon energies (~keV) to high energies (~keV). We show that this swing can be explained by photon polarization mode conversion at the vacuum resonance in the magnetar atmosphere; the resonance arises from the combined effects of plasma-induced birefringence and QED-induced vacuum birefringence in strong magnetic fields. This explanation suggests that the atmosphere of 4U 0142 be composed of partially ionized heavy elements, and the surface magnetic field be comparable or less than ~G, consistent with the dipole field inferred from the measured spindown. It also implies that the spin axis of 4U 0142+61 is aligned with its velocity direction. The polarized X-rays from 1RXS J170849.0-400910 do not show such swing, consistent with magnetar atmospheric emission with ~G.

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