We present an exact synthesis algorithm for qutrit unitaries in over the Clifford gate set with at most one ancilla. This extends the already known result of qutrit metaplectic gates being a subset of Clifford gate set with one ancilla. As an intermediary step, we construct an algorithm to convert 3-level unitaries into multiply-controlled gates, analogous to Gray codes converting 2-level unitaries into multiply-controlled gates. Finally, using catalytic embeddings, we present an algorithm to exactly synthesize unitaries over the Clifford gate set with at most 2 ancillas. This, in particular, gives an exact synthesis algorithm of single-qutrit Clifford over the multi-qutrit Clifford gate set with at most two ancillas.

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