We construct the Fermi gas formalism for the partition function of supersymmetric Chern-Simons theories with affine -type quiver diagrams with non-uniform ranks of the gauge groups and Fayet-Illiopoulos parameters by two different approaches: the open string formalism and the closed string formalism. In the closed string formalism approach, we find a novel connection between the partition function of this theory and the partition function of a four-nodes circular quiver supersymmetric Chern-Simons theory. We also studied a symmetry of a density matrix appeared in the closed string formalism. We further calculate the exact values of the partition function for finite , with which we identified the exponent of the leading non-perturbative effect in corresponding to the worldsheet instantons in the circular quiver supersymmetric Chern-Simons theories.

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