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We prove that modular functors in genus have geometric origin and support integral variations of Hodge structures for any odd level and -th root of unity . We identify the TQFT intersection forms and integral structures with the geometric ones. Moreover, the gluing property of the modular functors is recovered geometrically as a Künneth formula. The construction is based on the homological models of Felder-Wieczerkowski and Martel.

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