This paper presents a search for top-squark pair production in final states with a top quark, a charm quark and missing transverse momentum. The data were collected with the ATLAS detector during LHC Run 2 and corresponds to an integrated luminosity of 139fb of proton-proton collisions at a centre-of-mass energy of = 13 TeV. The analysis is motivated by an extended Minimal Supersymmetric Standard Model featuring a non-minimal flavour violation in the second- and third-generation squark sector. The top squark in this model has two possible decay modes, either or , where the is undetected. The analysis is optimised assuming that both of the decay modes are equally probable, leading to the most likely final state of . Good agreement is found between the Standard Model expectation and the data in the search regions. Exclusion limits at 95% CL are obtained in the vs plane and, in addition, limits on the branching ratio of the decay as a function of are also produced. Top-squark masses of up to 800 GeV are excluded for scenarios with light neutralinos, and top-squark masses up to 600 GeV are excluded in scenarios where the neutralino and the top squark are almost mass degenerate.

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