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We investigate higher-order topological states in honeycomb lattice with Y-Kekulé distortions that preserve crystalline symmetry. The gapped states in expanded and shrunken distortions are adiabatically connected to isolated hexamers and Y-shaped tetramer states, respectively, where the former possesses nontrivial higher-order topology characterized by a invariant. Topological corner states exist in a flake structure with expanded distortion where the hexamers are broken at the corners. Our work reveals that honeycomb lattice with Y-Kekulé distortions serves as a promising platform to study higher-order topological states.

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