The defect of a cubic threefold and applications to intermediate Jacobian fibrations

The defect of a cubic threefold $X$ with isolated singularities is a global invariant that measures the failure of $\mathbb{Q}$-factoriality. We compute the defect for such cubics in terms of topological data about the curve of lines through a singular point. We express the mixed Hodge structure on the middle cohomology of $X$ in terms of both the defect and local invariants of the singularities. We then relate the defect to various geometric properties of $X$: in particular, we show that a cubic threefold is not $\mathbb{Q}$-factorial if and only if it contains either a plane or a cubic scroll. We relate the defect to existence of compactified intermediate Jacobian fibrations with irreducible fibers associated to a cubic fourfold.