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Let be a quaternion algebra over a totally real number field. We give an explicit formula for heights of special points on the quaternionic Shimura variety associated with in terms of Faltings heights of CM abelian varieties. Special points correspond to CM fields and partial CM-types . We then show that our height is compatible with the canonical height of a partial CM-type defined by Pila, Shankar, and Tsimerman. This gives another proof that the height of a partial CM-type is bounded subpolynomially in terms of the discriminant of .

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