A zoned neutral atom architecture achieves exceptional fidelity by segregating the execution spaces of 1- and 2-qubit gates, being a promising candidate for high-accuracy quantum systems. Unfortunately, naively applying programs designed for static qubit topologies to zoned architectures may result in most execution time being consumed by inter-zone travels of atoms. To address this, we introduce Mantra (Minimizing trAp movemeNts for aTom aRray Architectures), which rewrites quantum programs to reduce the interleaving of single- and two-qubit gates. Mantra incorporates three strategies: (i) a fountain-shaped controlled-Z (CZ) chain, (ii) ZZ-interaction protocol without a 1-qubit gate, and (iii) preemptive gate scheduling. Mantra reduces inter-zone movements by 68%, physical gate counts by 35%, and improves circuit fidelities by 17% compared to the standard executions.

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