Semiconductor quantum dots offer a promising platform for controlling spin qubits and realizing quantum logic gates, essential for scalable quantum computing. In this work, we utilize a variational quantum compiling algorithm to design efficient three-qubit gates using a time-independent Hamiltonian composed of only physical interaction terms. The resulting gates, including the Toffoli and Fredkin gates, demonstrate high fidelity and robustness against both coherent and incoherent noise sources, including charge and nuclear spin noise. This method is applicable to a wide range of physical systems, such as superconducting qubits and trapped ions, paving the way for more resilient and universal quantum computing architectures.

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