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Tropical R is the birational map that intertwines products of geometric crystals and satisfies the Yang-Baxter equation. We show that the D^{(1)}n tropical R introduced by the authors and its reduction to A^{(2)}{2n-1} and C^{(1)}_n are equivalent to a system of bilinear difference equations of Hirota type. Associated tropical vertex models admit solutions in terms of tau functions of the BKP and DKP hierarchies.

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