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We study the flavor structures of zero-modes, which are originated from the modular symmetry on and its orbifold with magnetic fluxes. We introduce the constraint on the moduli parameters by , where denotes the complex structure moduli on . Such a constraint can be derived from the moduli stabilization. The modular symmetry of is and it is broken to by the moduli constraint. The wave functions represent their covering groups. We obtain various flavor groups in these models.

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