In the present work we calculate the tunneling density of states (DOS) of MgB% for different tunneling directions by directly solving the two-band Eliashberg equations (EE) in the real-axis formulation. This procedure reveals the fine structures of the DOS due to the optical phonons. Then we show that the numeric inversion of the standard \emph{single-band} EE (the only available method), when applied to the \emph{two-band} DOS of MgB, may lead to wrong estimates of the strength of certain phonon branches (e.g. the ) in the extracted electron-phonon spectral function . The fine structures produced by the two-band interaction at energies between 20 and 100 meV turn out to be clearly observable only for tunneling along the planes, when the extracted contains the combination $\alpha ^{2}F_{\sigma \pi }(\omega)\alpha ^{2}F_{\pi \pi}(\omega )\alpha ^{2}F_{\pi \sigma} (\omega)$ component. Only in this case it is possible to extract information on the -band contribution to the spectral functions. For any other tunneling direction, the -band contribution (which does not determine the superconducting properties of MgB) is dominant and almost coincides with the whole for tunneling along the c axis. Our results are compared with recent experimental tunneling and point-contact data.

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