In this study, we investigate the influence of deconfined QCD matter on quarkonium spin alignment in ultra-relativistic heavy-ion collisions. We estimate the spin alignment of charmonium (, and (2S)) and bottomonium ((1S), and (2S)) states by calculating the energy eigenvalues in a thermal rotating medium. We solve the Schrödinger equation with a medium-modified color-singlet potential considering the coupling of spin with vorticity and magnetic field. Furthermore, we evaluate the effect of medium temperature, vorticity, magnetic field, and momentum-space anisotropy on the elements of the spin density matrix. Our findings reveal that vorticity increases the spin alignment, while the magnetic fields and anisotropy modify the observables in a state-dependent manner. These findings deepen our understanding of quarkonium spin alignment in an anisotropic magneto-vortical thermal medium, shedding light on spin transport phenomena in heavy-ion collisions.

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