I provide two solutions to the problem of categorifying quantum link invariants, which work uniformly for all gauge groups and originate in geometry and string theory. The first is based on a category of equivariant B-type branes on which is a moduli space of singular -monopoles on . In this paper, I give the second approach, which is based on a category of equivariant A-type branes on with potential . The first and the second approaches are related by equivariant homological mirror symmetry: is homological mirror to , a core locus of preserved by an equivariant action related to . The theory of equivariant A-branes on is the same as the derived category of modules of an algebra , which is a cousin of the algebra considered by Khovanov, Lauda, Rouquier and Webster, but simpler. The result is a new, geometric formulation of Khovanov homology, which generalizes to all groups. In part III, I will explain the string theory origin of the two approaches, and the relation to an approach being developed by Witten. The three parts may be read independently.

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