Gaps in the Thue--Morse word

The Thue–Morse sequence is a prototypical automatic sequence found in diverse areas of mathematics, and in computer science. We study occurrences of factors $w$ within this sequence, more precisely, the sequence of gaps between consecutive occurrences. This gap sequence is morphic; we prove that it is not automatic as soon as the length of $w$ is at least two, thereby answering a question by J.~Shallit in the affirmative. We give an explicit method to compute the \emph{discrepancy} of the number of occurrences of the block $\mathtt{01}$ in the Thue–Morse sequence. We prove that the sequence of discrepancies is the sequence of output sums of a certain base-$2$ transducer.