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Let be a Lie groupoid equipped with a connection, given by a smooth distribution transversal to the fibers of the source map. Under the assumption that the distribution is integrable, we define a version of de Rham cohomology for the pair , and we study connections on principal -bundles over in terms of the associated Atiyah sequence of vector bundles. We also discuss associated constructions for differentiable stacks. Finally, we develop the corresponding Chern-Weil theory and describe characteristic classes of principal G-bundles over a pair .

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