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We study the systematic uncertainty and biases introduced by theoretical assumptions needed to include large- DIS data in a global QCD analysis. Working in the CTEQ-JLab framework, we focus on different implementations of higher-twist corrections to the nucleon structure functions and of offshell PDF deformations in deuteron targets and discuss how their interplay impacts the extraction of the -quark PDF and the calculation of the neutron structure function at large .

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