We study the Galois groups of polynomials arising from a compatible family of representations with big orthogonal monodromy. We show that the Galois groups are usually as large as possible given the constraints imposed on them by a functional equation and discriminant considerations. As an application, we consider the Frobenius polynomials arising from the middle 'etale cohomology of hypersurfaces in of degree at least . We also consider the -functions of quadratic twists of fixed degree of an elliptic curve over a function field . To determine the typical Galois group in the elliptic curve setting requires using some known cases of the Birch and Swinnerton-Dyer conjecture. This extends and generalizes work of Chavdarov, Katz and Jouve.

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