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We provide a definition of Vafa-Witten invariants for projective surface Deligne-Mumford stacks, generalizing the construction of Tanaka-Thomas on the Vafa-Witten invariants for projective surfaces inspired by the S-duality conjecture. We give calculations for a root stack over a general type quintic surface, and quintic surfaces with ADE singularities. The relationship between the Vafa-Witten invariants of quintic surfaces with ADE singularities and the Vafa-Witten invariants of their crepant resolutions is also discussed.

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