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For an abelian type Shimura variety and an odd prime of good reduction, we characterize the regularity in codimension one of Zariski closures of Ekedahl–Oort strata in terms of the Frobenius action on the root datum. We give an algorithm that detects codimension one singularities for arbitrary Ekedahl–Oort strata. When the Shimura datum is of split type, we relate the singularities of Ekedahl–Oort strata to a stack of -zips over the complex numbers. We study the existence of generalized Hasse invariants on this stack.

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