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We study correlation estimates of automatic sequences (that is, sequences computable by finite automata) with polynomial phases. As a consequence, we provide a new class of good weights for classical and polynomial ergodic theorems, not coming themselves from dynamical systems. We show that automatic sequences are good weights in for polynomial averages and totally ergodic systems. For totally balanced automatic sequences (i.e., sequences converging to zero in mean along arithmetic progressions) the pointwise weighted ergodic theorem in holds. Moreover, invertible automatic sequences are good weights for the pointwise polynomial ergodic theorem in , .

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