The decoding problem is a ubiquitous algorithmic task in fault-tolerant quantum computing, and solving it efficiently is essential for scalable quantum computing. Here, we prove that minimum-weight decoding is NP-hard in three quintessential settings: (i) the color code with Pauli errors, (ii) the surface code with Pauli , and errors, and (iii) the surface code with a transversal CNOT gate, Pauli and measurement bit-flip errors. Our results show that computational intractability already arises in basic and practically relevant decoding problems central to both quantum memories and logical circuit implementations, highlighting a sharp computational complexity separation between minimum-weight decoding and its approximate realizations.

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