In the trace reconstruction problem an unknown string ${\bf x}=(x_0,\dots,x_{n-1})\in{0,1,…,m-1}^n$ is observed through the deletion channel, which deletes each with a certain probability, yielding a contracted string . Earlier works have proved that if each is deleted with the same probability , then independent copies of the contracted string suffice to reconstruct with high probability. We extend this upper bound to the setting where the deletion probabilities vary, assuming certain regularity conditions. First we consider the case where is deleted with some known probability . Then we consider the case where each letter $\zeta\in {0,1,…,m-1}q_\zeta$.

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