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In this paper, we study the degree counting formula of the rank two Toda system with simple singular source when and The key step is to derive the degree formula of the shadow system, which arises from the bubbling solutions as tends to . In order to compute the topological degree of the shadow system, we need to find some suitable deformation. During this deformation, we shall deal with difficulty arising from the new phenomena: blow up does not necessarily imply concentration of mass. This phenomena occurs due to the collapsing of singularities. This is a continuation of the previous work Lee, Lin, Wei and Yang.

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