While topological quantum computation is intrinsically fault-tolerant at zero temperature, it loses its topological protection at any finite temperature. We present a scheme to protect the information stored in a system supporting non-cyclic anyons against thermal and measurement errors. The correction procedure builds on the work of G'acs [Gacs 1986] and Harrington [Harrington 2004] and operates as a local cellular automaton. In contrast to previously studied schemes, our scheme is valid for both abelian and non-abelian anyons and accounts for measurement errors. We analytically prove the existence of a fault-tolerant threshold for a certain class of non-Abelian anyon models, and numerically simulate the procedure for the specific example of Ising anyons. The result of our simulations are consistent with a threshold between and .

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