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We review the current status of the theory of thermal emission from the surface layers of neutron stars with strong magnetic fields $B\sim 10^{10}-10^{15}$ G, including formation of the spectrum in a partially ionized atmosphere and at a condensed surface. In particular, we describe recent progress in modeling partially ionized atmospheres of central compact objects in supernova remnants, which may have moderately strong fields $B\sim 10^{10}-10^{11}$ G. Special attention is given to polarization of thermal radiation emitted by a neutron star surface. Finally, we briefly describe applications of the theory to observations of thermally emitting isolated neutron stars.

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