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The general approach for describing systems with Bose-Einstein condensate, where atoms interact through nonlocal pair potentials, is presented. A special attention is paid to nonintegrable potentials, such as the dipolar interaction potential. The potentials that are not absolutely integrable can have not well defined Fourier transforms. Using formally such not defined Fourier transforms leads to unphysical conclusions. For making the Fourier transform well defined, the interaction potential has to be regularized. This is illustrated by the example of dipolar interactions.

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