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This work identifies the Reshetikhin-Turaev invariant of links in terms of a trace map on factorization homology. In particular, to recover the knot invariants associated to Chern-Simons theories, we construct a filtered -algebra by BV quantization of Chern-Simons theory for a semi-simple Lie algebra with invariant pairing~, and we prove that a finite-dimensional representation of the Drinfeld-Jimbo quantum group defines a perfect module~. For any framed link in , we then prove that there is an equality between the factorization homology trace for and the Reshetikhin-Turaev link invariant determined by~.

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