The Born-Oppenheimer electronic wavefunction picks up a topological phase factor , a special case of Berry phase, when it is transported around a conical intersection of two adiabatic potential energy surfaces in -space. We show that this topological quantity reverts to a geometric quantity if the geometric phase $\gamma = \oint \langle \Phi_R |\nabla_{\mu} \Phi_R\rangle \cdot d_{\mu}\Phi_R®$ from the exact electron-nuclear factorization instead of the adiabatic function . A model of a pseudorotating molecule, also applicable to dynamical Jahn-Teller ions in bulk crystals, provides the first examples of induced vector potentials and molecular geometric phase from the exact factorization. The induced vector potential gives a contribution to the circulating nuclear current which cannot be removed by a gauge transformation. The exact potential energy surface is calculated and found to contain a term depending on the Fubini-Study metric for the conditional electronic wavefunction.

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