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Let be the -th eigenvalue of Sturm-Liouville systems with separated boundary conditions, we build up the Hill-type formula, which represent as a determinant of finite matrix. This is the first attack on such a formula under non-periodic type boundary conditions. Consequently, we get the Krein-type trace formula based on the Hill-type formula, which express as trace of finite matrices. The trace formula can be used to estimate the conjugate point alone a geodesic in Riemannian manifold and to get some infinite sum identities.

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