We describe a categorification of the cluster algebra structure of multi-homogeneous coordinate rings of partial flag varieties of arbitrary Dynkin type using Cohen-Macaulay modules over orders. This completes the categorification of Geiss-Leclerc-Schr"oer by adding the missing coefficients. To achieve this, for an order and an idempotent , we introduce a subcategory of and study its properties. In particular, under some mild assumptions, we construct an equivalence of exact categories $(\operatorname{CM}\nolimits_e A)/[Ae] \cong \operatorname{Sub}\nolimits QBQB := A/(e)$. These results generalize work by Jensen-King-Su concerning the cluster algebra structure of the Grassmannian .

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