We report a theoretical study of the macroscopic quantum tunneling (MQT) in small Josephson junctions containing randomly distributed two-level systems. We focus on the magnetic field dependent crossover temperature between the thermal fluctuation and quantum regimes of switching from the superconducting (the zero-voltage) state to a resistive one. In the absence of two-levels systems the crossover temperature shows a smooth decrease with an applied magnetic field characterized by an external flux . Beyond that we predict a narrow peak in the dependence of occurring in the intermediate range of . The effect becomes more pronounced as the junction size increases. We explain this effect quantitatively by a strong resonant suppression of a potential barrier for the Josephson phase escape that is due to the coherent quantum Rabi oscillations in two-level systems present in the junction.

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