We present a systematic search for molecular hydrogen absorption systems at high redshift in quasar spectra from the Sloan Digital Sky Survey (SDSS) II Data Release 7 and SDSS-III Data Release 9. We have selected candidates using a modified profile fitting technique taking into account that the Ly forest can effectively mimic H absorption systems at the resolution of SDSS data. To estimate the confidence level of the detections, we use two methods: a Monte-Carlo sampling and an analysis of control samples. The analysis of control samples allows us to define regions of the spectral quality parameter space where H absorption systems can be confidently identified. We find that H absorption systems with column densities can be detected in only less than 3% of SDSS quasar spectra. We estimate the upper limit on the detection rate of saturated H absorption systems ($\log {\rm N_{H_2}} > 19\alpha$ (DLA) systems to be about 7%. We provide a sample of 23 confident H absorption system candidates that would be interesting to follow up with high resolution spectrographs. There is a 1 color excess and non-significant extinction excess in quasar spectra with an H candidate compared to standard DLA-bearing quasar spectra. The equivalent widths (EWs) of C II, Si II and Al III (but not Fe II) absorptions associated with H candidate DLAs are larger compared to standard DLAs. This is probably related to a larger spread in velocity of the absorption lines in the H bearing sample.

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