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We describe theoretically the process of spontaneous parametric down-conversion in quadratic nonlinear waveguide arrays in the presence of linear loss. We derive a set of discrete Schrodinger-type equations for the biphoton wave function, and the wave function of one photon when the other photon in a pair is lost. We demonstrate effects arising from loss-affected interference between the generated photon pairs and show that nonlinear waveguide arrays can serve as a robust loss-tolerant integrated platform for the generation of entangled photon states with non-classical spatial correlations.

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