A common approach to perform PCA on probability measures is to embed them into a Hilbert space where standard functional PCA techniques apply. While convergence rates for estimating the embedding of a single measure from samples are well understood, the literature has not addressed the setting involving multiple measures. In this paper, we study PCA in a double asymptotic regime where probability measures are observed, each through samples. We derive convergence rates of the form for the empirical covariance operator and the PCA excess risk, where depends on the chosen embedding. This characterizes the relationship between the number of measures and the number of samples per measure, revealing a sparse (small ) to dense (large ) transition in the convergence behavior. Moreover, we prove that the dense-regime rate is minimax optimal for the empirical covariance error. Our numerical experiments validate these theoretical rates and demonstrate that appropriate subsampling preserves PCA accuracy while reducing computational cost.

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