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We study minimal annuli in of finite type by relating them to harmonic maps of finite type. We rephrase an iteration by Pinkall-Sterling in terms of polynomial Killing fields. We discuss spectral curves, spectral data and the geometry of the isospectral set. We consider polynomial Killing fields with zeroes and the corresponding singular spectral curves, bubbletons and simple factors. We investigate the differentiable structure on the isospectral set of any finite type minimal annulus. We apply the theory to a 2-parameter family of embedded minimal annuli foliated by horizontal circles.

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