We introduce several new methods to obtain upper bounds on the number of solutions of the congruences and $f(x) \equiv y^2 \pmod p,pf(x,y)$ belongs to an arbitrary square with side length . We use these results and methods to derive non-trivial upper bounds for the number of hyperelliptic curves over the finite field of elements, with coefficients in a -dimensional cube $ (a_0,…, a_{2g-1})\in [R_0+1,R_0+M]\times…\times [R_{2g-1}+1,R_{2g-1}+M]$ that are isomorphic to a given curve and give an almost sharp lower bound on the number of non-isomorphic hyperelliptic curves with coefficients in that cube. Furthermore, we study the size of the smallest box that contain a partial trajectory of a polynomial dynamical system over .

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