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Using gauge/gravity duality, we compute jet quenching parameter in confined and deconfined phases of noncommutative Sakai-Sugimoto model. In the confined phase jet quenching parameter is zero and noncommutativity does not affect it. In deconfined phase we find that the leading correction is negative i.e. it reduces the magnitude of the jet quenching parameter as compared to its value in commutative background. Moreover it is seen that the effect of leading correction is more pronounced at high temperatures

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