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In this paper we present analytical breather solutions of the three-dimensional nonlinear generalized Gross-Pitaevskii equation. We use an Ansatz to reduce the three-dimensional equation with space- and time-dependent coefficients into an one-dimensional equation with constant coefficients. The key point is to show that both the space- and time-dependent coefficients of the nonlinear equation can contribute to modulate the breather excitations. We briefly discuss the experimental feasibility of the results in Bose-Einstein condensates.

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