The anisotropy in the microwave conductivity of the ortho-II YBaCuO is studied within the kinetic energy driven superconducting mechanism. The ortho-II YBaCuO is characterized by a periodic alternative of filled and empty -axis CuO chains. By considering the CuO chain induced extended anisotropy impurity scattering, the main features of the anisotropy in the microwave conductivity of the ortho-II YBaCuO are reproduced based on the nodal approximation of the quasiparticle excitations and scattering processes, including the intensity and lineshape of the energy and temperature dependence of the -axis and -axis microwave conductivities. Our results also confirm that the -axis CuO chain induced impurity is the main source of the anisotropy.

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