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We study two-photon scattering in a one-dimensional coupled resonator arrays (CRA) by a two-level system (TLS), which is localized as a quantum controller. The -matrix is analytically calculated for various two-photon scattering processes by TLS, e.g., one photon is confined by TLS to form a bound state while the other is in the scattering state. It is discovered from the poles of the -matrix that there exist two kinds of three-body bound states for describing two bound photons localized around TLS.

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