Bound states in the continuum (BICs) have been extensively exploited to enhance light–matter interactions in metamaterials, yet their emergence and utility in multi-atom waveguide platforms remain far less explored. Here we study atom–waveguide-dressed BICs in a one-dimensional coupled-resonator waveguide, where two spatially separated atomic arrays couple to distinct resonators with time-dependent strengths. We show that these BICs support a standing-wave photonic mode and enable the transfer of an arbitrary unknown quantum state between the two arrays with fidelities exceeding . The protocol remains robust against both disorder and intrinsic dissipation. Our results establish BICs as long-lived resources for high-fidelity quantum information processing in waveguide-QED architectures.

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