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We show that the strength of non-commutativity could play a role in determining the boundary condition of a physical problem. As a toy model we consider the inverse square problem in non-commutative space. The scale invariance of the system is known to be explicitly broken by the scale of non-commutativity \Theta. The resulting problem in non-commutative space is analyzed. It is shown that despite the presence of higher singular potential coming from the leading term of the expansion of the potential to first order in \Theta, it can have a self-adjoint extensions. The boundary conditions are obtained, belong to a 1-parameter family and related to the strength of non-commutativity.

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