Let be a smooth projective variety of dimension and let be an ample line bundle on . Let be the moduli space of -stable vector bundles on of rank and Chern classes for . We define the Brill-Noether filtration on as $W_{H}^{k}(r;c_1,…, c_{s})= {E \in M_{X,H}(r;c_1, …, c_{s}) | h^0(X,E) \geq k }W_{H}^{k}(r;c_1,…, c_{s})k$th determinantal variety of a morphism of vector bundles on , provided for $i \geq 2E \in M_{X,H}(r;c_1, …, c_{s})$. We also compute the expected dimension of . Very surprisingly we will see that the Brill-Noether stratification allow us to compare moduli spaces of vector bundles on Hirzebruch surfaces stables with respect to different polarizations. We will also study the Brill-Noether loci of the moduli space of instanton bundles and we will see that they have the expected dimension.

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